PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0015s0085.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 404aa    MW: 45155.4 Da    PI: 4.7609
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0015s0085.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.3e-193584255
                  AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +y GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Kaladp0015s0085.1.p 35 RYVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 84
                         79*******.7*********33....35**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.81E-313491No hitNo description
Gene3DG3DSA:3.30.730.105.1E-283591IPR001471AP2/ERF domain
PfamPF008473.3E-143584IPR001471AP2/ERF domain
SMARTSM003802.1E-353598IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-193593IPR016177DNA-binding domain
PROSITE profilePS5103219.9813592IPR001471AP2/ERF domain
PRINTSPR003671.8E-83647IPR001471AP2/ERF domain
PRINTSPR003671.8E-85874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MSRKRRANEQ AMEHQAGKMC PDVFVKESPR KAPKRYVGVR QRPSGRWVAE IKDTIQKIRV  60
WLGTFDTAEE AARAYDEAAC LLRGANTRTN FWPSEPCLTT PALPSKITKL LLHRLKARDC  120
NMEPKGKTQQ VTAERNDPDF DKVAGYRDFK EKDEGGFSTA HFTDEFLNDA EDYPACDDNL  180
FINDAEDYHA LPSSSLHACG TESQQTEVME HQSMCNSTSW SAVETSHMES DSKPGGEGEA  240
ETNREGIERP QVGALDFHFV DDVGKASAAE CYYSAFQIAE EIGEPLMEQG GGVGDEPAML  300
LNSVMRLMKY ERKFSASLYA FNGVTECLKL KVGAEIRCGD HLSNLRDACG RKKREDEDNV  360
ARKRDDKEAI GKEAEQAMEL SEGDSDLILW SCLDLQPICF VNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-133491462ATERF1
3gcc_A3e-133491462ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035804.11e-100PREDICTED: uncharacterized protein LOC105133481
STRINGPOPTR_0017s12370.13e-98(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-23related to AP2 11